I don't love the use of exec, but it is getting unwieldy to pass
configuration options on the sphinx-build command line, and I
anticipate further use of conditionals.
---
 configure          |  8 ++++++++
 doc/Makefile.local |  2 +-
 doc/conf.py        | 11 ++++++++---
 3 files changed, 17 insertions(+), 4 deletions(-)

diff --git a/configure b/configure
index 80cbac4f..177432db 100755
--- a/configure
+++ b/configure
@@ -1548,6 +1548,14 @@ NOTMUCH_HAVE_PYTHON3_PYTEST=${have_python3_pytest}
 PLATFORM=${platform}
 EOF
 
+cat > sphinx.config <<EOF
+# Generate by configure, run from doc/conf.py
+EOF
+if [ $WITH_EMACS = "1" ]; then
+    printf "tags.add('WITH_EMACS')\n" >> sphinx.config
+fi
+printf "rsti_dir = '%s'\n" $(realpath emacs) >> sphinx.config
+
 # Finally, after everything configured, inform the user how to continue.
 cat <<EOF
 
diff --git a/doc/Makefile.local b/doc/Makefile.local
index 769438ed..598b6028 100644
--- a/doc/Makefile.local
+++ b/doc/Makefile.local
@@ -4,7 +4,7 @@ dir := doc
 
 # You can set these variables from the command line.
 SPHINXOPTS    := -q
-SPHINXBUILD   = WITH_EMACS=${WITH_EMACS} RSTI_DIR=$(realpath emacs) sphinx-build
+SPHINXBUILD   = sphinx-build
 DOCBUILDDIR      := $(dir)/_build
 
 # Internal variables.
diff --git a/doc/conf.py b/doc/conf.py
index 70987ac5..fdff2a2c 100644
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -22,6 +22,13 @@ for pathdir in ['.', '..']:
         with open(version_file,'r') as infile:
             version=infile.read().replace('\n','')
 
+# read generated config
+for pathdir in ['.', '..']:
+    conf_file = os.path.join(location,pathdir,'sphinx.config')
+    if os.path.exists(conf_file):
+        with open(conf_file,'r') as infile:
+            exec(''.join(infile.readlines()))
+
 # The full version, including alpha/beta/rc tags.
 release = version
 
@@ -29,12 +36,10 @@ release = version
 # directories to ignore when looking for source files.
 exclude_patterns = ['_build']
 
-if os.environ.get('WITH_EMACS') == '1':
+if tags.has('WITH_EMACS'):
     # Hacky reimplementation of include to workaround limitations of
     # sphinx-doc
     lines = ['.. include:: /../emacs/rstdoc.rsti\n\n'] # in the source tree
-    rsti_dir = os.environ.get('RSTI_DIR')
-    # the other files are from the build tree
     for file in ('notmuch.rsti', 'notmuch-lib.rsti', 'notmuch-show.rsti', 'notmuch-tag.rsti'):
         lines.extend(open(rsti_dir+'/'+file))
     rst_epilog = ''.join(lines)
-- 
2.27.0
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